University Scholarship
Publications and Grants

Annice Najafi

Computational Science, Doctor of Philosophy (College of Sciences)

ORCID profile

Student Scholarship

Scholarly Works

Chart data
TypeCount
Academic Publications9
Data and Process2
Other1

Scholarly Works by Year

Chart data
YearTypeCount
2021Academic Publications1
2023Academic Publications4
2024Academic Publications1
2025Academic Publications3
2025Data and Process2
2023Other1

Scholarship for Annice Najafi

Academic Publications

SurprisalAnalysis: an open-source software for information-theoretic analysis of gene expression
Annice Najafi; Mariike Kuijjer
Bioinformatics Advances, 2025, journal article
RMCDA: The comprehensive R library for applying Multi-Criteria Decision Analysis methods
Annice Najafi; Mirzaei, Shokoufeh
Software Impacts, 2025, journal article
RMCDA: The comprehensive R library for applying multi-criteria decision analysis methods
Annice Najafi; Mirzaei, Shokoufeh
Arxiv, 2025, journal article
Protocol for inferring epithelial-to-mesenchymal transition trajectories from single-cell RNA sequencing data using R
Annice Najafi; Jolly, Mohit Kumar; George, Jason T.
Star Protocols, 2024, journal article
Population dynamics of EMT elucidates the timing and distribution of phenotypic intra-tumoral heterogeneity
Annice Najafi; Jolly, M.K.; Jolly, Mohit K.; George, J.T.; George, Jason T.
Iscience, 2023, journal article

A stochastic data-driven model predicts the timing and distribution of the epithelial-mesenchymal transition
Annice Najafi; Jolly, Mohit K.; George, Jason T.
Cancer Research, 2023, journal article
DEVELOPMENT OF A SCORING METRIC FOR THE EPITHELIAL-MESENCHYMAL TRANSITION (EMT) IN TROPHOBLAST DIFFERENTIATION
Annice Najafi; George, Jason T.; Jolly, Mohit Kumar; Ackerman, William E.; Zamudio, Stacy; Illsley, Nicholas P.
Placenta, 2023, journal article
Population Dynamics of EMT Elucidates the Timing and Distribution of Phenotypic Intra-tumoral Heterogeneity
Annice Najafi; Jolly, M.K.; Mohit K. Jolly; George, J.T.; Jason T. George
Biorxiv, 2023, preprint
Bispectral EEG (BSEEG) quantifying neuro-inflammation in mice induced by systemic inflammation: A potential mouse model of delirium
Yamanashi, T.; Yamanashi, Takehiko; Malicoat, J.R.; Malicoat, Johnny R.; Steffen, K.T.; Steffen, Kalvon T.; Zarei, K.; Zarei, Kasra; Li, R.; Li, Rui; Purnell, B.S.; Purnell, Benton S.; Annice Najafi; et al.
Journal of Psychiatric Research, 2021, journal article

Data and Process

RMCDA
Annice Najafi
2025, software
SurprisalAnalysis
Annice Najafi
2025, software

Other

Population Dynamics of EMT Elucidates the Timing and Distribution of Phenotypic Intra-Tumoral Heterogeneity
Annice Najafi; Jolly, M.K.; George, J.T.
Ssrn, 2023, other